Monday 27 December 2021

Unsupervised Machine Learning

Data is, by default, unlabeled. Labeling data is manual (or somewhat automated) process, thus timely and expensive. Unsupervised machine learning uses unlabeled data (raw, cheap, widely available) for model training. Nevertheless, this comes with the cost of unsupervised learning requiring higher volumes of data for the training if comparing to supervised learning.

Typical use cases for unsupervised ML:
  • Clustering
  • Anomaly Detection
  • Dimensionality Reduction

Clustering


Unsupervised learning algorithms extract features and patterns from unlabeled data which can then be used to label and group together data points that share same or similar features. This is known as clustering and is one of typical problems solved by unsupervised learning.

image source: KDNuggets

Clustering algorithms:
  • k-means clustering
  • neural networks
    • hypothesis function is a mapping from input space back into this input space
    • the goal of an unsupervised learning loss function is to measure the difference between the hypothesis function and the input itself

Example: Image set clustering


Each cluster contains images which have the same object in them. Model does not know the name of that object, that it is e.g. bird. It only knows (learns) that objects in each cluster share the same/similar features. We might only need to set in advance the number of clusters we want to get.

In supervised learning, if we have a labeled dataset which contains images of birds, fish and mammals, our model will learn to identify if the image contains a bird, a fish or a mammal. In unsupervised learning, model will learn to distinguish and separate images that share same/similar features and it would group them in three clusters but it would not know that in one cluster are birds and in another fish for example, it would just know that there are three (or maybe even more) types of objects. 


image credits: Devin Pickell, g2.com


Example: Customer segmentation


Each cluster contains customers of some differentiable profile. This helps in e.g. targeted marketing.

image source: data-flair.training


Example: Spam detection


Unsupervised learning algorithm can analyze huge volumes of emails and uncover the features and patterns that indicate spam (and keep getting better at flagging spam over time).


Anomaly Detection


Another type of problems solved by unsupervised learning is anomaly detection. The goal here is to find abnormal data points. Model is trained to detect if data point has some unusual features.

Example: Fraud detection (Anomaly Detection)


Fraudulent transactions tend to involve larger sums of money. Fraud only occurs with transfers and cash-out transactions.

image credit: Shirin Elsinghorst, codecentric.de

Class 0 is normal transaction. Class 1 is fraudulent transaction.


Dimensionality Reduction


Data dimensionality refers to feature space. Each data point can be defined as a vector in N-dimensional space where N is number of features. Some features are more and some less important, in a way how much do they contribute in differentiating data points. The more features, the more complex model is, the more time and storage is required for its training and inference. The idea here is to reduce number of features without losing the semantic meaning of the data. E.g. bird can still be distinguished from other animals by recognising that it has features like beak, wings and a tail but eye color or feather color pattern is not important.

Some dimensionality reduction techniques:
  • Independent Components Analysis (ICA)
  • Principal Components Analysis (PCA)
Sometimes, before applying k-means clustering, a dimensionality reduction is applied on data.


Principal Component Analysis (PCA)


Transforms data from d-dimensional to p-dimensional feature space where p < d. It first finds the dimension of the highest variance (e.g. direction where the data is most spread out) - principal component. Data points are then projected onto this dimension. Small amount of information gets lost but overall data integrity is not changed.

PCA is based on reducing correlation (linear dependence) between features. If two features are linearly dependent, we can derive value of one feature if value of the another one is known. PCA removes this redundancy by projecting a set of linearly dependent features into a smaller set of new, uncorrelated features. 


Original data points are in 2-dimensional feature space. Features are denoted as x and y.
 

PCA finds the direction along which values have the highest variance. It is a red diagonal in our case.


Data points are projected onto component which carries the highest variance. That principal component becomes a newly derived feature. The next principal component (pc2) which carries the most variance is the one defined by the line perpendicular to the direction of pc1.


As pc2 exhibits low variance, this component does not carry much information (that helps differentiating data points). It can be ignored (small amount of information is lost) thus reducing the feature space to a single dimension.

image credits: V. Powell, setosa.io

Example: Solution to “Cocktail Party” problem


Dimension Reduction via Independent Components Analysis (ICA) is used to extract independent sources of audio signal from a recording which contains mixed signals.


image source: 2014, J. Shlens: "A Tutorial on Independent Component Analysis"

References



Monday 20 December 2021

Installing Python3 on Mac Big Sur

Mac comes with Python 2 by default and I wanted to install and use Python 3. I installed it by using brew

% brew install python3
Running `brew update --preinstall`...
==> Auto-updated Homebrew!
Updated 2 taps (homebrew/core and homebrew/cask).
==> New Formulae
abi-compliance-checker     gotify                     pam-reattach
abi-dumper                 hurl                       payload-dumper-go
biber                      imap-backup                pip-audit
brigade-cli                isa-l                      pocsuite3
chroma                     jsonschema                 rpki-client
coursier                   kubernetes-cli@1.22        salt-lint
djhtml                     lua-language-server        sevenzip
dynomite                   mcfly                      statix
fastp                      mist                       tsduck
goawk                      openliberty-jakartaee9     vtable-dumper
goplus                     openliberty-webprofile9
==> Updated Formulae
Updated 1431 formulae.
==> Deleted Formulae
ape             es              jerasure        makepp          swiftplate
balance         eventlog        kakasi          marst           torrentcheck
bbcolors        flasm           l-smash         mboxgrep        udns
colorsvn        fondu           libbind         md              whitedb
contacts        gconf           liberasurecode  namazu          xidel
csv-fix         gcore           libmill         postmark        xtail
dlite           gf-complete     libopendkim     redsocks        zdelta
dnsrend         git-hooks       libpuzzle       sdhash
drip            git-sh          libvbucket      shorten
dshb            henplus         m2c             srmio
eject           httptunnel      magnetix        svdlibc
==> New Casks
appflowy            finalshell          projector           teamspeak-client
appium-inspector    folder-colorizer    schildichat         tidgi
centered            grammarly-desktop   sitala              volley
citrix-workspace    handyprintpro       soundtoys           wolai
cron                linearmouse         spaceid             xstation5
emmetapp            ludwig              supermjograph
equinox             macrorecorder       tablecruncher
==> Updated Casks
Updated 648 casks.
==> Deleted Casks
air-connect                              lelivrescolairefr
aja-system-test                          napari
anka-build-cloud-registry                octoscreen
asc-timetables                           platelet
avast-secureline-vpn                     pullover
chameleon-ssd-optimizer                  punto-switcher
chocolat                                 qit
domainbrain                              river-sparkle
drama                                    scrutiny
everweb                                  tmnotifier
freeter                                  unity-linux-support-for-editor
gitbook                                  unity-lumin-support-for-editor
inboard                                  visicut

python@3.9 3.9.6 is already installed but outdated (so it will be upgraded).
==> Downloading https://ghcr.io/v2/homebrew/core/gdbm/manifests/1.22
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==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
######################################################################## 100.0%
==> Upgrading python3
  3.9.6 -> 3.9.9 

==> Installing dependencies for python@3.9: gdbm, ca-certificates, openssl@1.1, readline and sqlite
==> Installing python@3.9 dependency: gdbm
==> Pouring gdbm--1.22.big_sur.bottle.tar.gz
🍺  /usr/local/Cellar/gdbm/1.22: 24 files, 957.9KB
==> Installing python@3.9 dependency: ca-certificates
==> Pouring ca-certificates--2021-10-26.all.bottle.tar.gz
==> Regenerating CA certificate bundle from keychain, this may take a while...
🍺  /usr/local/Cellar/ca-certificates/2021-10-26: 3 files, 208.5KB
==> Installing python@3.9 dependency: openssl@1.1
==> Pouring openssl@1.1--1.1.1m.big_sur.bottle.tar.gz
🍺  /usr/local/Cellar/openssl@1.1/1.1.1m: 8,081 files, 18.5MB
==> Installing python@3.9 dependency: readline
==> Pouring readline--8.1.1.big_sur.bottle.tar.gz
🍺  /usr/local/Cellar/readline/8.1.1: 48 files, 1.6MB
==> Installing python@3.9 dependency: sqlite
==> Pouring sqlite--3.37.0.big_sur.bottle.tar.gz
🍺  /usr/local/Cellar/sqlite/3.37.0: 11 files, 4.3MB
==> Installing python@3.9
==> Pouring python@3.9--3.9.9.big_sur.bottle.tar.gz
==> /usr/local/Cellar/python@3.9/3.9.9/bin/python3 -m ensurepip
==> /usr/local/Cellar/python@3.9/3.9.9/bin/python3 -m pip install -v --no-deps -
==> Caveats
Python has been installed as
  /usr/local/bin/python3

Unversioned symlinks `python`, `python-config`, `pip` etc. pointing to
`python3`, `python3-config`, `pip3` etc., respectively, have been installed into
  /usr/local/opt/python@3.9/libexec/bin

You can install Python packages with
  pip3 install <package>
They will install into the site-package directory
  /usr/local/lib/python3.9/site-packages

tkinter is no longer included with this formula, but it is available separately:
  brew install python-tk@3.9

See: https://docs.brew.sh/Homebrew-and-Python
==> Summary
🍺  /usr/local/Cellar/python@3.9/3.9.9: 3,080 files, 55.0MB
==> `brew cleanup` has not been run in the last 30 days, running now...
Disable this behaviour by setting HOMEBREW_NO_INSTALL_CLEANUP.
Hide these hints with HOMEBREW_NO_ENV_HINTS (see `man brew`).
Removing: /usr/local/Cellar/gdbm/1.20... (24 files, 825.0KB)
Removing: /Users/bojan/Library/Caches/Homebrew/gdbm--1.20... (221KB)
Removing: /Users/bojan/Library/Caches/Homebrew/mpdecimal--2.5.1... (548.3KB)
Removing: /usr/local/Cellar/openssl@1.1/1.1.1k... (8,071 files, 18.5MB)
Removing: /Users/bojan/Library/Caches/Homebrew/openssl@1.1--1.1.1k... (5.4MB)
Removing: /usr/local/Cellar/python@3.9/3.9.6... (3,085 files, 54.7MB)
Removing: /Users/bojan/Library/Caches/Homebrew/python@3.9--3.9.6... (13.6MB)
Removing: /usr/local/Cellar/readline/8.1... (48 files, 1.6MB)
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Removing: /Users/bojan/Library/Caches/Homebrew/xz--5.2.5... (417.6KB)
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Removing: /Users/bojan/Library/Caches/Homebrew/openssl@1.1_bottle_manifest--1.1.1k... (6KB)
Removing: /Users/bojan/Library/Caches/Homebrew/python@3.9_bottle_manifest--3.9.6... (15.4KB)
Removing: /Users/bojan/Library/Caches/Homebrew/readline_bottle_manifest--8.1... (5.5KB)
Removing: /Users/bojan/Library/Caches/Homebrew/you-get_bottle_manifest--0.4.1536... (11.2KB)
Removing: /Users/bojan/Library/Caches/Homebrew/gdbm_bottle_manifest--1.20... (5.2KB)
Removing: /Users/bojan/Library/Caches/Homebrew/mpdecimal_bottle_manifest--2.5.1... (5.2KB)
Removing: /Users/bojan/Library/Logs/Homebrew/gdbm... (64B)
Removing: /Users/bojan/Library/Logs/Homebrew/mpdecimal... (64B)
Removing: /Users/bojan/Library/Logs/Homebrew/rtmpdump... (64B)
Removing: /Users/bojan/Library/Logs/Homebrew/readline... (64B)
Removing: /Users/bojan/Library/Logs/Homebrew/sqlite... (64B)
Removing: /Users/bojan/Library/Logs/Homebrew/xz... (64B)
Removing: /Users/bojan/Library/Logs/Homebrew/openssl@1.1... (64B)
Removing: /Users/bojan/Library/Logs/Homebrew/you-get... (64B)
Removing: /Users/bojan/Library/Logs/Homebrew/python@3.9... (2 files, 2.4KB)
Pruned 0 symbolic links and 2 directories from /usr/local
==> Upgrading 1 dependent:
Disable this behaviour by setting HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK.
Hide these hints with HOMEBREW_NO_ENV_HINTS (see `man brew`).
you-get 0.4.1536 -> 0.4.1555
==> Downloading https://ghcr.io/v2/homebrew/core/python/3.10/manifests/3.10.1
######################################################################## 100.0%
==> Downloading https://ghcr.io/v2/homebrew/core/python/3.10/blobs/sha256:c4f29a
==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
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==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sh
######################################################################## 100.0%
==> Upgrading you-get
  0.4.1536 -> 0.4.1555 

==> Installing dependencies for you-get: python@3.10
==> Installing you-get dependency: python@3.10
==> Pouring python@3.10--3.10.1.big_sur.bottle.tar.gz
==> /usr/local/Cellar/python@3.10/3.10.1/bin/python3 -m ensurepip
==> /usr/local/Cellar/python@3.10/3.10.1/bin/python3 -m pip install -v --no-deps
🍺  /usr/local/Cellar/python@3.10/3.10.1: 3,132 files, 56MB
==> Installing you-get
==> Pouring you-get--0.4.1555.big_sur.bottle.tar.gz
==> Caveats
To use post-processing options, run `brew install ffmpeg` or `brew install libav`.
==> Summary
🍺  /usr/local/Cellar/you-get/0.4.1555: 736 files, 8.5MB
==> Running `brew cleanup you-get`...
Removing: /usr/local/Cellar/you-get/0.4.1536... (845 files, 8.6MB)
==> Checking for dependents of upgraded formulae...
==> No broken dependents found!
==> Caveats
==> python@3.9
Python has been installed as
  /usr/local/bin/python3

Unversioned symlinks `python`, `python-config`, `pip` etc. pointing to
`python3`, `python3-config`, `pip3` etc., respectively, have been installed into
  /usr/local/opt/python@3.9/libexec/bin

You can install Python packages with
  pip3 install <package>
They will install into the site-package directory
  /usr/local/lib/python3.9/site-packages

tkinter is no longer included with this formula, but it is available separately:
  brew install python-tk@3.9

See: https://docs.brew.sh/Homebrew-and-Python
==> you-get
To use post-processing options, run `brew install ffmpeg` or `brew install libav`.


If zsh configuration file does not exist, create it and open it:

% touch ~/.zshrc
% vi ~/.zshrc

Type in it:

export PATH=/usr/local/opt/python@3.9/libexec/bin:$PATH

Restart the terminal.

% which python
/usr/local/opt/python@3.9/libexec/bin/python
% python --version
Python 3.9.9

If using VSCode, restart it and it will also pick up this version of Python in its Terminal.


Wednesday 1 December 2021

Installing Go on Mac Big Sur

 I followed instructions listed here. I downloaded go1.17.3.darwin-amd64.pkg and run it.



Upon installation I checked that Go bin path is indeed added to $PATH and also that go command works fine:

~ % echo $PATH
/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/go/bin

~ % go version
go version go1.17.3 darwin/amd64